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Although I have seen this condition several times, I have never been able to match it with any bacterial or fungal disease illustrated in the text books (not the ones that I have, at least). I don't think its 'Pythium' (blackleg) fungal disease. It might be Xanthomonas 'campestris pv. pelargonii' (bacterial stem rot), but I'm not sure. Although this seems most like it, I don't think so. Both diseases are common on geraniums. There are also several other geranium diseases which I have not yet investigated, such as 'Fusarium cutting rot' or 'Cottony stem rot'.
Anyway, whatever the cause, I sealed the whole lot in a freezer bag after first spraying with bleach, then thew the lot in the bin. On no account should this type of infected compost be allowed to infect garden soil.
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